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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00048g01417.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB_related | ||||||||
Protein Properties | Length: 747aa MW: 82776.7 Da PI: 4.4915 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.3 | 9.4e-10 | 597 | 638 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el+++a +q+G++ ++I + ++ gRt+ q+ +++ k Peaxi162Scf00048g01417.1 597 RWSKQDTELFYEAMQQFGTD-LSLIQQLFP-GRTRRQLYHKYKK 638 9*******************.*********.***********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 1.1E-26 | 588 | 672 | No hit | No description |
PROSITE profile | PS51293 | 9.483 | 593 | 644 | IPR017884 | SANT domain |
SMART | SM00717 | 7.5E-8 | 594 | 642 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.05E-9 | 596 | 644 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.0E-5 | 597 | 638 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.76E-6 | 597 | 638 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 747 aa Download sequence Send to blast |
SREVEAELKL DNSTKRLLLF CFSVASVIMD LLDDIFADSA AKTAKVGGKF QPKAKPRPMK 60 KGPVVASSAV SLTSKPSGDN ATTGSSEALK TGKNPQNYSE SSVLVEPSLE HPVAAEILGP 120 SVGSNLDTNT VIPDNNEDQN SCFEKSEGQT AEVCIGLDSS DDLLPHSSAI DPSGVYVAGA 180 EKGQEQPSFP VSSIDDSAPS TSNLQPNDVK TAEDPLTCQG SVVPISGSCQ EVGTYPSLEA 240 DILGVTTTSG LSIRRFQPKS KLQVYRERHD TSTPDSDVGE SVSYQPDSQL GHSEMDFVDK 300 GKEYGFPADD VLDFSARGFD NNVITESTHE SPVHEEYGME ASHSDAGIPA EHPEATSQIP 360 EEPVPQRPKA KRQKLRATNL SAISEENGVG RSLRSRRKSV NTNKLVDEPE EIIDDGEYVN 420 DSVTNGNDND AENFLVENES QGKNVQRKSK KTVTEEGKRV RKSKKTTEAS DQAANKKPKK 480 FSHSSRQKRR RGTSLIIVDK ALLEAPEDAI DYQKVPIKDL IILAEHKERL AKKDAAAAQI 540 PSTDQSVGAS VSNYDEDETH PSDEDEEATD HQVRPTVQDA DVCFNYQTYM VKTPSTRWSK 600 QDTELFYEAM QQFGTDLSLI QQLFPGRTRR QLYHKYKKEE RQNPFRFHDA LTNRSKDHSH 660 FERVIERLKQ IEAEELQKAD NDESIDLAGE EEVEGTQEIN EEEANSEQVE EKEVETMEQD 720 VQQMESPVKD YESEDDFLKW SQYKSEV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 446 | 464 | RKSKKTVTEEGKRVRKSKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009761825.1 | 0.0 | PREDICTED: uncharacterized protein LOC104213954 isoform X2 | ||||
TrEMBL | M1BI38 | 0.0 | M1BI38_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400045728 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5902 | 23 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 2e-47 | MYB_related family protein |